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Renames and organizes files from default Aqualog files

clean_files.Rd

Takes the default files from the Aqualog (absorbance, blank, and sample) it renames the files to the sample identifier and creates folder for each file type in the main file directory.

Usage

clean_files(prjpath, meta_file, meta_sheet = "log", ...)

Arguments

prjpath

the file path of the main file directory where data is located

meta_file

file location of metadata table, used to determine how samples were run

meta_sheet

optional, sheet name of the metadata only required if metadata is an .xlsx file

...

arguments to pass down to functions with 'clean_files'

Value

metadata table with an added column for the unique ID

Examples

if (FALSE) {
meta <- clean_files(prjpath=prjpath, meta_file=meta_file,
meta_sheet = meta_sheet)
}