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abs_parm()
Get absorbance peaks and indices
abs_preprocess()
Convert absorbance data from a .dat file to .csv file
check_samps()
Checks to make sure samples and metadata match
clean_files()
Renames and organizes files from default Aqualog files
create_files()
Create file structure
data_process
A set of processed eems data
eem_coble_peaks2()
Get Coble Peaks and other fluorescence indicies
eem_cut2()
Trim EEMs to specified emission and/or excitation wavelengths
eem_proccess()
Process EEMs samples
eem_remove_scattering2()
Removes rayleigh and raman scattering
empty_eems()
Check for EEMs that are empty
files_rename()
Rename default file names from Aqualog
find_cut_width()
Finds optimal scattering cut widths based on EEM set
get_doc()
Input DOC data into metadata
get_indices()
Export absorbance and fluorencence indices and peaks to an excel file
ggeem2()
Plot EEMs plots as contour plots
load_eems()
Load renamed and organized Aqualog data into R
meta
An example of ideal metadata formatting for a sample set run on the Aqualog
meta_clean
A set of raw eems data
plot_eems()
Exports EEMs contour plots to a file
raman()
Removes raman scattering with optional interpolation
raw_eem
A set of raw eems data
rayleigh()
Removes rayleigh scattering with optional interpolation
run_eems()
Takes raw EEMs and absorbance data from Aqualog, returns cleaned, processed data Combines all the 'fewsdom' functions to make one function to process samples.
save_eems()
Save EEMs and absorbance data to file