Changelog • eemanalyzeR

eemanalyzeR 1.2.0

(2026-04-16)

Moving some of the checks of the QA/QC samples to the run_eems function so they don’t warn the user multiple times as the check_mdl and check_std are run several times throughout run_eems.
Updated validate_blanks
- to clip to the area of interest before plotting so it is easier to see any issues
- increased the width of the scattering to remove a little to better see any issues
- added a message directing users to check out the output-documentation for checking the blank which prints once per session.
Updating vignettes.
- Added custom-process-steps to describe how to update and save changes to defaults and use multiple methods.
- Added figures and snippets of the output files in output-documentation and getting-started.
- Added section in output-documentation to describe what to look for in the blank validation step. (#19)

(2026-03-31)

Updated create_mdl and create_std functions to ask to update the default qaqc_dir in the user_config if it’s NA and not directory is provided. This fixes the issue caused by version 1.0.2 which de-automated creating and then using the QA/QC standard files (#22).
Modified how mdl and std files are saved, adding an argument method to the functions which is used to give a unique name for different QA/QC methods (#24).
Created a new helper function get_qaqc which will look for QA/QC files, ask the user which set to use if there’s more than one set, update the readme with the files used, and return the QA/QC files (#24).

(2026-03-30)

Added an argument (sum_plot) to export_data to skip the summary plot to fix bug when processing a large (>50) samples at a time (#28).
Added check when running check_mdl or check_std to warn if the wavelengths differ between the QA/QC file and the samples (#24).
Further updated the pattern defaults to be a little more flexible for skip in dir_read to work with our example data (#20).

(2026-03-26)

Updating all functions to remove the use of helper function .qaqc_dir and replace with get_qaqc_dir which pulls from the config file (#22).
Updated the default value for qaqc_dir in the config file to .na.character.
When creating MDL and check standard files, if no qaqc_dir is specified it will return the file as an R object with a warning.

(2026-03-09)

Updated defaults for skip in dir_read to be more robust and to skip samples with “abs” in the name (#20).

(2026-01-02)

Initial publicly available version.